Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs60942590 chr3:53016421 G/A 0.000283 117 42.9 23.75 25.63 KM Plot
THYM rs60945775 chr9:98516829 A/G 8.38E-7 117 46.6 41.7 33.78 KM Plot
THYM rs61051739 chr4:115573983 C/G 0 118 38.33 44.58 4.13 KM Plot
THYM rs61199475 chr15:71812534 G/C 1.51E-6 116 39.75 47.63 12.52 KM Plot
THYM rs61239526 chr4:12544327 C/T 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs61282699 chr20:29530210 C/T 7.56E-6 119 38.23 50.1 10.78 KM Plot
THYM rs61359022 chr11:11852532 A/G 0.000115 117 41.77 40.78 13.35 KM Plot
THYM rs61595198 chr9:97149709 AT/ATT 0.000101 118 41.77 38.13 17.03 KM Plot
THYM rs61618568 chr7:29688512 T/A 5.22E-13 118 38.33 46.07 6 KM Plot
THYM rs61706626 chr15:71812491 A/G 1.72E-6 115 38.83 47.63 12.52 KM Plot
THYM rs61737580 chr4:7100399 G/A 3.03E-5 114 44.38 35.07 13.72 KM Plot
THYM rs61764062 chr12:53238347 G/A 0 116 39.75 96.37 2.9 KM Plot
THYM rs61831889 chr10:1534198 G/T 0.000185 117 39.5 42.82 25.83 KM Plot
THYM rs61831890 chr10:1534680 G/A 0.000185 117 38.33 42.9 25.83 KM Plot
THYM rs61831891 chr10:1534761 T/G 0.000185 117 38.33 42.9 25.83 KM Plot